http://www.ncbi.nlm.nih.gov/Malaria/feature.html
Features Malaria Genetics & Genomics Pubmed Entrez BLAST OMIM Taxonomy Structure Home General Info MGP Info Data Release What's New Features Meetings Site Search Plasmodium_vivax Rodent Malaria Maps & Markers Genetic Maps Optical Maps Segregation Data Markers Electronic PCR Sequence Data BLAST Genbank BLAST Custom BLAST Enter Request ID Tutorial Epidemiology Taxonomy Tools Literature Search Research Projects Malaria Links Credits/Contacts FTP Access Features Anopheles gambiae Genome Scaffold The first version of the Anopheles gambiae genome scaffold was_submitted into Genbank by Celera Genomics and is now available through Map Viewer which also display tblastn alignments of all Drosophila_melanogaster proteins hitting the Anopheles scaffolds. BLAST acess to Anopheles gambiae genome is also available. http://www. ncbi. nlm. nih. gov/cgi-bin/Entrez/map_search? chr=agambiae. inf NIH/NIAID Announcement: http://www. niaid. nih. gov/dmid/genomes/anopheles. htm Trace Arhive Database provides mega blastable access to the raw_data underlying all_the sequences generated by the genome project. E_g. the An. gambiae genome trace data from Celera Genomics is available. http://www. ncbi. nlm. nih. gov/Traces/trace. cgi? NLM Gateway allows users to search in multiple retrieval systems at the U_s. National Library of Medicine (NLM. The current Gateway searches MEDLINE/Pubmed, OLDMEDLINE, LOCATORPLUS, AIDS Meetings, Health Services Research Meetings , HSRPROJ, MEDLINEPLUS and DIRLINE. See the Overview for details. cyclops is a graphical program developed at the Sanger Centre for comparing a whole chromosome assembly with the corresponding physical and/or genetic maps. The user can move a graphical representation of selected contigs around a window (called a'Sandbox')to try to align them with the physical and/or genetic maps of the chromosome. The program also shows puc bridges from the ends of contigs and allows the user to'tie'pairs or groups of contigs together and move them around the Sandbox as a single unit. Cyclops is_used mainly for the finishing process and there_is no annotation associated Artemis is_used for Annotation). http://www. sanger. ac. uk/Software/sequencing/docs/harper/cyclops. shtml For a Windows_95/98/NT /2000'freestanding executable':'http://www. ncbi. nlm. nih. gov/Malaria/Cyclops/read_cyclops_win. html Anodb is a database containing genomic/biological information on anopheline mosquitoes with an emphasis on Anopheles gambiae, the prominent malaria vector. http ://konops. imbb. forth. gr/Anodb/The Malaria_parasite Metabolic Pathways website coordinated by Hagai Ginsburg opens to the public. http ://sites. huji. ac. il/malaria/The Malaria Research Reference Reagent Resource Center (MR4 ) provides a central source of quality controlled malaria-related reagents and information to the international malaria research community. Materials available to qualified, registered users includes parasites, mosquito vectors, antibodies, antigens, gene libraries, molecular probes and constructs, and human biological material. http://www. malaria. mr4. org/mr4pages/index. html The International Journal for Parasitology , Volume 30/4 (April 2000)- Parasite Genome-Thematic issue is freely available at the journal's website. http ://www. elsevier. com/locate/parasitology International Training_course on Bioinformatics (Computational Biology) Applied to Genomic Studies at the Oswaldo Cruz Foundation-FIOCRUZ, Rio_de_janeiro, Brazil May 21-June 15,2001 It aims to promote knowledge, capability strengthening, and training of young scientists on cutting_edge DNA technology and its applications to tropical diseases research. The objective is to introduce the participants to basic information on the application of genome information that can be_used and the potential for development of tools that can be_applied in tropical diseases research. The international four-week training_course will focus_on bioinformatics (computational biology) concepts with specific examples on the nine TDR targeted diseases listed below(*)especially Malaria, Trypanosome, Schistosome, Filirial , Leishmania parasites. http://www. dbbm. fiocruz. br/class/P. yoelii Genome Database (TIGR/NMRC: TIGR/NMRC P. yoelii Genome Database TIGR and the Malaria Program at the Naval Medical Research_center (NMRC ) are collaborating on a research program to provide low coverage sequencing of the P. yoelii genome (http://www. tigr. org/tdb/edb2 /pya1/htmls. This project should identify over 90%of all_the genes of the P. yoelii genome. Plasmodium Proteome Classification and Analysis (WHO/EBI)- web_pages includes:--a functional catalogue of all current Plasmodium protein sequences-a facility to search the Plasmodium protein sequence titles and additional annotation for any string of letters and/or numbers-a catalogue of Plasmodium protein sequences placed in key biochemical pathways-a catalogue of Plasmodium protein sequences placed in_general protein/enzyme classes-a facility to search the Plasmodium protein sequences using a user defined motif-a catalogue of Pfam domains found in Plasmodium http://www. ebi. ac. uk/parasites/Plasgn/Proteome/proteome. html Plasmodium falciparum only version: http://www. ebi. ac. uk/parasites/Plasgn/Falcipproteome/proteome. html Plasmodiumdb (Univ . of Penn)- is the Malaria Genome Sequencing Project Consortium Database maintained at the Univ of Pennsylvania. Resources that can be found at Plasmodb include:--Relational_database queries, sequence retrieval, gene predictions (chr2 Chr3), expression analysis, DNA and protein feature identification, gene ontologies, metabolic pathways, EST sequences and Blast analysis.-Text-based search queries of Finished and Unfinished sequences, View Blast-results, for each contig, download sequences (multiple formats) and User defined amino_acid Motif Searches.--Geneplot-Platform-independent graphical browser, sequence retrieval. Portable on CD-ROM.--Links-Other sites relevant to Plasmodium research http://plasmodb. org/Protozoan parasite search facilitie (WHO/EBI)- Motif search and general proteome searches can now be_performed against the following databases-All Leishmania proteins-Trypanosoma brucei proteins-Trypanosoma cruzi proteins-Leishmania major Friedlin proteins-All kinetoplastids proteins -All Plasmodium proteins-Plasmodium falciparum proteins The motif search facility can be found at: http://www. ebi. ac. uk/cgi-bin/parasites/motif_search. p and the more general keyword/text term search can be found at: http://www. ebi. ac. uk/cgi-bin/parasites/class_search. p SCOPE Malaria Research & Policy Web Forum was_developed for research scientists, field practioners, university instructors, policy_makers, and others who do_work related_to malaria. http ://scope. educ. washington. edu/welcome/malaria/Last updated: April 09,2002 Disclaimer Privacy statement