http://www.ncbi.nlm.nih.gov/PMGifs/Genomes/new_micr.html
-Listeria_monocytogenes-Listeria innocua Mycoplasmataceae Mycoplasma-Mycoplasma genitalium-Mycoplasma_pneumoniae-Mycoplasma pulmonis Ureaplasma-Ureaplasma_urealyticum
. pallidum Thermotogales-Thermotoga_maritima Thermus/Deinococcus group-Deinococcus radiodurans Planctomyces/Chlamydia/Verrucomicrobium group-Chlamydia_trachomatis-Chlamydia_muridarum
-Chlamydophila_pneumoniae CWL029-Chlamydophila_pneumoniae AR39-Chlamydophila_pneumoniae J138 Proteobacteria alpha subdivision Caulobacter group-Caulobacter_crescentus Rhizobiaceae group-Agrobacterium_tumefaciens
-Mesorhizobium loti-Sinorhizobium_meliloti-Brucella_melitensis Rickettsiales-Rickettsia_prowazekii Madrid E-Rickettsia_conorii Malish 7 beta subdivision
Neisseria_meningitidis-Neisseria_meningitidis Z2491 (serogroup A)- Neisseria_meningitidis MC58 (serogroup B) Ralstonia-Ralstonia solanacearum gamma
subdivision Enterobacteriaceae group Enterobacteriaceae Escherichia-Escherichia_coli-Escherichia_coli_o157:
H7 EDL933 Salmonella-Salmonella_typhi-Salmonella_typhimurium LT2 Buchnera-Buchnera sp.
APS Pasteurellaceae-Haemophilus_influenzae Rd-Pasteurella_multocida-Yersinia_pestis Pseudomonadaceae-Pseudomonas_aeruginosa Xanthomonas group-Xylella fastidiosa Vibrionaceae
-Vibrio_cholerae delta/epsilon subdivisions-Campylobacter_jejuni-Helicobacter_pylori 26695-Helicobacter_pylori J99 Cyanobacteria Synechocystis PCC6803-Nostoc sp.
http://www.ncbi.nlm.nih.gov/PMGifs/Genomes/eub_u.html
90 Acidithiobacillus ferrooxidans NC_002923 3101487 bp May 16 2002 Actinobacillus_actinomycetemcomitans NC_002924 2057010 bp Jan 23 2002 Bacillus_anthracis NC_002925 5227297 bp
May 16 2002 Bacillus_cereus NC_003909 7837710 bp Apr 10 2002 Bacteroides_fragilis NC_003228 5229932 bp Nov 6 2001 Bordetella_bronchiseptica NC_002927 5275487 bp
Nov 6 2001 Bordetella parapertussis NC_002928 4772297 bp Nov 6 2001 Bordetella_pertussis NC_002929 4086186 bp Nov 6 2001 Brucella_melitensis biovar
10 2002 Burkholderia fungorum NC_003371 9638173 bp May 9 2002 Burkholderia mallei NC_002970 5937356 bp May 16 2002 Burkholderia_pseudomallei NC_002930
7170628 bp Feb 22 2001 Campylobacter_jejuni RM1221 NC_003912 1792356 bp May 16 2002 Carboxydothermus hydrogenoformans NC_002972 3146540 bp May
16 2002 Chlamydophila caviae NC_003361 9768726 bp Feb 14 2002 Chlorobium tepidum NC_002932 2154946 bp May 17 2002 Chloroflexus aurantiacus
2488635 bp Nov 6 2001 Coxiella_burnetii NC_002971 1995276 bp Aug 28 2001 Cytophaga hutchinsonii NC_002711 4428762 bp May 9 2002 Dehalococcoides
bp Oct 3 2001 Desulfitobacterium hafniense NC_002726 6960652 bp May 9 2002 Desulfovibrio_vulgaris NC_002937 3571425 bp Oct 3 2001 Dichelobacter_nodosus
3845613 bp Feb 14 2002 Haemophilus_ducreyi NC_002940 1698953 bp Oct 24 2001 Klebsiella_pneumoniae NC_002941 4893316 bp Jul 7 1999 Legionella_pneumophila NC_002942
9 2002 Magnetospirillum magnetotacticum NC_002725 9212200 bp May 9 2002 Methylococcus_capsulatus NC_002977 3305777 bp Mar 14 2002 Mycobacterium_avium NC_002943 5475491 bp
16 2002 Mycobacterium_tuberculosis 210 NC_002975 7001865 bp Aug 28 2001 Neisseria_gonorrhoeae NC_002946 2153944 bp Sep 28 2000 Neisseria_meningitidis serogroup C NC_003221
2213267 bp Nov 6 2001 Nitrosomonas europaea NC_002714 3007966 bp May 9 2002 Nostoc punctiforme NC_002791 8941326 bp May
9 2002 Novosphingobium aromaticivorans NC_002719 4233740 bp May 9 2002 Pectobacterium chrysanthemi NC_003916 4926151 bp Apr 10 2002 Porphyromonas_gingivalis NC_002950
2343478 bp Dec 7 2001 Prevotella_intermedia NC_003441 3204910 bp May 16 2002 Prochlorococcus marinus str MIT 9313 NC_002715 2398915 bp
May 9 2002 Prochlorococcus marinus subsp. pastoris str. CCMP1378 NC_002790 1674813 bp May 9 2002 Pseudomonas_fluorescens NC_002716
6473376 bp May 9 2002 Pseudomonas_putida KT2440 NC_002947
6203083 bp Apr 10 2002 Pseudomonas_putida PRS1 NC_002948 201388 bp Apr 26 2000 Pseudomonas syringae NC_002949 6555165 bp May
5466647 bp May 9 2002 Ruminococcus albus NC_003373 6809787 bp May 16 2002 Salmonella_enterica subsp. enterica serovar Dublin
NC_002961 8262167 bp Feb 22 2001 Salmonella_enteritidis NC_002962 3632106 bp Jan 8 2001 Salmonella paratyphi NC_002963 4401729 bp Jul
7 1999 Salmonella_typhimurium TR7095 NC_003286 298046 bp May 13 1997 Shewanella_putrefaciens NC_002966 5131108 bp Aug 28 2001 Silicibacter pomeroyi NC_003911
9 2002 Yersinia_enterocolitica (type 0: 8) NC_003222 4655892 bp Nov 6 2001 Revised June 10,2002
http://www.ncbi.nlm.nih.gov/PMGifs/Genomes/eub_g.html
/List 72 Agrobacterium_tumefaciens str.
C58 (Cereon) NC_003062 2841581 bp Oct 3 2001 NC_003063 2074782 bp Oct 3 2001 Agrobacterium_tumefaciens str.
NC_001318 910724 bp Sep 7 2001 Brucella_melitensis NC_003317 2117144 bp Dec 27 2001 NC_003318 1177787 bp Dec 27 2001 Buchnera sp.
APS NC_002528 640681 bp Sep 10 2001 Campylobacter_jejuni NC_002163 1641481 bp Sep 27 2001 Caulobacter_crescentus CB15 NC_002696 4016947 bp
Mar 21 2001 Chlamydia_muridarum NC_002620 1069411 bp Oct 2 2001 Chlamydia_trachomatis NC_000117 1042519 bp Sep 10 2001 Chlamydophila_pneumoniae AR39 NC_002179
1229858 bp Nov 6 2001 Chlamydophila_pneumoniae CWL029 NC_000922 1230230 bp Sep 10 2001 Chlamydophila_pneumoniae J138 NC_002491 1226565 bp Jul
3309400 bp Mar 12 2001 Deinococcus radiodurans NC_001263 2648638 bp Sep 28 2001 NC_001264 412348 bp Sep 28 2001 Escherichia_coli K12
NC_000913 4639221 bp Oct 15 2001 Escherichia_coli_o157:
H7 NC_002695 5498450 bp Mar 7 2001 Escherichia_coli_o157:
H7 EDL933 NC_002655 5528445 bp Sep 27 2001 Fusobacterium_nucleatum subsp.
nucleatum ATCC 25586 NC_003454 2174500 bp Mar 25 2002 Haemophilus_influenzae Rd NC_000907 1830138 bp Oct 19 2001 Helicobacter_pylori 26695 NC_000915
1667867 bp Sep 7 2001 Helicobacter_pylori J99 NC_000921 1643831 bp Sep 10 2001 Lactococcus_lactis subsp. lactis NC_002662 2365589 bp
4403836 bp Oct 2 2001 Mycobacterium_tuberculosis H37rv NC_000962 4411529 bp Sep 7 2001 Mycoplasma genitalium NC_000908 580074 bp Mar
12 2001 Mycoplasma_pneumoniae NC_000912 816394 bp Apr 2 2001 Mycoplasma pulmonis NC_002771 963879 bp Oct 2 2001 Neisseria_meningitidis MC58 NC_003112
2272351 bp Sep 19 2001 Neisseria_meningitidis Z2491 NC_003116
2184406 bp Sep 27 2001 Nostoc sp. PCC 7120 NC_003272 6413771 bp Nov 28 2001 Pasteurella_multocida NC_002663 2257487 bp Sep
10 2001 Pseudomonas_aeruginosa NC_002516 6264403 bp Sep 10 2001 Ralstonia solanacearum NC_003295 3716413 bp Dec 7 2001 NC_003296 2094509 bp Dec
7 2001 Rickettsia_conorii NC_003103 1268755 bp Sep 14 2001 Rickettsia_prowazekii NC_000963 1111523 bp Sep 10 2001 Salmonella_enterica subsp. enterica serovar
Typhi NC_003198 4809037 bp Nov 7 2001 Salmonella_typhi NC_002305 180461 bp May 14 2000 Salmonella_typhimurium LT2 NC_003197 4857432 bp
Oct 25 2001 Sinorhizobium_meliloti NC_003047 3654135 bp Oct 5 2001 Staphylococcus_aureus subsp. aureus MW2 NC_003923 2820462 bp May
28 2002 Synechocystis sp. PCC 6803 NC_000911 3573470 bp Oct 30 1996 Thermoanaerobacter tengcongensis NC_003869 2689445 bp May 9 2002 Thermotoga_maritima
NC_000853 1860725 bp Sep 10 2001 Treponema_pallidum NC_000919 1138011 bp Sep 7 2001 Ureaplasma_urealyticum NC_002162 751719 bp Jan 10 2000 Vibrio_cholerae
NC_002505 2961149 bp Sep 10 2001 NC_002506 1072315 bp Sep 10 2001 Xanthomonas axonopodis pv. citri str. 306 NC_003919
5175554 bp May 23 2002 Xanthomonas_campestris pv. campestris str. ATCC 33913 NC_003902 5076188 bp May 23 2002 Xylella fastidiosa
Yersinia_pestis NC_003143 4653728 bp Oct 15 2001 Revised June 10,2002
http://www.ncbi.nlm.nih.gov/PMGifs/Genomes/new_eub_g.html
halodurans Mollicutes-Mycoplasma genitalium-Mycoplasma_pneumoniae-Mycoplasma pulmonis-Ureaplasma_urealyticum Streptococcaceae-Lactococcus_lactis-Streptococcus_pneumoniae-Streptococcus_pyogenes
. pallidum Thermotogales-Thermotoga_maritima Thermus/Deinococcus group-Deinococcus radiodurans Planctomyces/Chlamydia/Verrucomicrobium group-Chlamydia_trachomatis-Chlamydia_muridarum
-Chlamydophila pneumoniae CWL029-Chlamydophila_pneumoniae AR39-Chlamydophila_pneumoniae J138 Proteobacteria alpha subdivision rickettsias-Rickettsia_prowazekii Madrid
E rhizobacteria-Mesorhizobium loti Caulobacter-Caulobacter_crescentus beta subdivision Neisseria_meningitidis-Neisseria_meningitidis Z2491 (serogroup
A)- Neisseria_meningitidis MC58 (serogroup B) gamma subdivision Enterobacteriaceae-Escherichia_coli K12-Escherichia_coli_o157:
H7 EDL933-Escherichia_coli_o157:
APS Pasteurellaceae-Haemophilus_influenzae Rd-Pasteurella_multocida Pseudomonadaceae-Pseudomonas_aeruginosa Xanthomonas group-Xylella fastidiosa Vibrionaceae-Vibrio_cholerae
delta/epsilon subdivisions-Campylobacter_jejuni-Helicobacter_pylori 26695-Helicobacter_pylori J99 Cyanobacteria Synechocystis PCC6803 Revised July 25,2001
http://www.ncbi.nlm.nih.gov/Entrez/Genome/org.html
Mycoplasma genitalium Mycoplasma_pneumoniae Mycoplasma pulmonis Staphylococcus_aureus N315 Streptococcus_pyogenes Ureaplasma_urealyticum Buchnera sp. APS
Campylobacter_jejuni Caulobacter_crescentus Escherichia_coli k12 Escherichia_coli_o157:
H7 Haemophilus_influenzae Helicobacter_pylori Helicobacter_pylori J99 Mesorhizobium loti Neisseria_meningitidis MC58 Neisseria_meningitidis Z2491 Pasteurella_multocida
Pseudomonas_aeruginosa Rickettsia_prowazekii Vibrio_cholerae Xylella fastidiosa Aquificales Aquifex aeolicus Spirochaetales Borrelia_burgdorferi Treponema_pallidum Chlamydia
Chlamydia_muridarum Chlamydia_trachomatis C. pneumoniae J138 C. pneumoniae CWL029 C. pneumoniae AR39 Deinococcales
Deinococcus radiodurans R1 Cyanobacteria Synechocystis PCC6803 Thermotogales Thermotoga_maritima Questions or Comments?
http://www.ncbi.nlm.nih.gov/cgi-bin/Entrez/taxik2?isbact=1
. melitensis Bacillus_subtilis Buchnera sp.
Pyrococcus abyssi R. prowazekii R. solanacearum Rickettsia_conorii S. aureus subsp. aureus Mu50
. volcanium Treponema_pallidum U. urealyticum Vibrio_cholerae X. axonopodis pv. citri str. 306 X. campestris
pv. campestris str. ATCC 33913 X. fastidiosa 9a5c Yersinia_pestis A. fulgidus A. tumefaciens str. C58
B. halodurans B. melitensis Bacillus_subtilis Buchnera sp. APS C. acetobutylicum C. crescentus
Pyrococcus abyssi R. prowazekii R. solanacearum Rickettsia_conorii S. aureus subsp. aureus Mu50
. volcanium Treponema_pallidum U. urealyticum Vibrio_cholerae X. axonopodis pv. citri str. 306 X. campestris
pv. campestris str. ATCC 33913 X. fastidiosa 9a5c Yersinia_pestis A. fulgidus A. tumefaciens str. C58
B. halodurans B. melitensis Bacillus_subtilis Buchnera sp. APS C. acetobutylicum C. crescentus
Pyrococcus abyssi R. prowazekii R. solanacearum Rickettsia_conorii S. aureus subsp. aureus Mu50
. volcanium Treponema_pallidum U. urealyticum Vibrio_cholerae X. axonopodis pv. citri str. 306 X. campestris
pv. campestris str. ATCC 33913 X. fastidiosa 9a5c Yersinia_pestis Distribution of Aeropyrum pernix homologs
http://www.ncbi.nlm.nih.gov/COG/
1560 1329 V Thermotoga_maritima 1858 1527 D Deinococcus radiodurans 3187 2226 R Mycobacterium_tuberculosis 3927 2585 Mycobacterium_leprae 1605 1134 L Lactococcus_lactis 2267 1618 Streptococcus_pyogenes 1697 1211 B
Bacillus_subtilis 4118 2870 Bacillus halodurans 4066 2878 C Synechocystis 3167 2159 E Escherichia_coli K12 4275 3414 Escherichia_coli_o157 5315 3662 Buchnera sp.
APS 575 568 F Pseudomonas_aeruginosa 5567 4392 G Vibrio_cholerae 3835 2820 H Haemophilus_influenzae 1714 1542 Pasteurella_multocida 2015 1751 S Xylella fastidiosa 2831 1589 N
Neisseria_meningitidis MC58 2080 1506 Neisseria_meningitidis Z2491 2065 1498 U Helicobacter_pylori 1576 1096 Helicobacter_pylori J99 1491 1075 Campylobacter_jejuni 1634 1302 J Mesorhizobium loti
7275 4959 Caulobacter_crescentus 3737 2628 X Rickettsia_prowazekii 835 697 I Chlamydia_trachomatis 895 631 Chlamydia_pneumoniae 1054 648 T Treponema_pallidum 1036 716 Borrelia_burgdorferi 1637 696 W Ureaplasma_urealyticum 614 406 Mycoplasma_pneumoniae 689 425 Mycoplasma
http://www.ncbi.nlm.nih.gov/htbin-post/Taxonomy/wgetorg?id=601
taxonomy id lock Taxonomy browser (Salmonella_typhi) Salmonella_typhi Taxonomy ID:
Eberthella) typhi synonym, Salmonella_typhi (Schroeter 1886) Warren and Scott 1930 synonym,'Bacillus typhi'Schroeter 1886 synonym
Salmonella Comments and References:
1980) 30: 225-420. No Pubmed record available. Euzeby JP (1999) Euzeby, J. P.'Revised Salmonella nomenclature:
designation of Salmonella_enterica (ex Kauffmann and Edwards 1952) Le Minor and Popoff 1987 sp. nov.,nom. rev. as the neotype
species of the Genus_salmonella Lignieres 1900 (approved lists 1980), rejection of the name Salmonella choleraesuis (Smith 1894) Weldin 1927 (approved lists 1980),
and conservation of the name Salmonella_typhi (Schroeter 1886) Warren and Scott 1930 (approved lists 1980).
. and Yabuuchi, E.'Recognition of nomenclatural standing of Salmonella_typhi (Approved Lists 1980), Salmonella_enteritidis (Approved Lists 1980) and Salmonella_typhimurium (Approved Lists 1980),
. and Scott, W. M.'A new serological type of Salmonella.'
. and Stackebrandt, E.'Phylogenetic relationships of Salmonella_typhi and Salmonella_typhimurium based_on 16s rrna sequence analysis.'Int. J. Syst. Bacteriol.
http://www.ncbi.nlm.nih.gov/htbin-post/Taxonomy/wgetorg?id=287
taxonomy id lock Taxonomy browser (Pseudomonas_aeruginosa) Pseudomonas_aeruginosa Taxonomy ID:
Pseudomonas_aeruginosa (Schroeter 1872) Migula 1900 synonym, Bacterium aeruginosum synonym,'Bacterium aeruginosum'Schroeter 1872 synonym,'Bacterium
1884) Flugge 1886 synonym, Pseudomonas pyocyanea synonym,'Pseudomonas pyocyanea'(Zopf 1884) Migula 1895 synonym, Bacterium pyocyaneum
synonym,'Bacterium pyocyaneum'(Zopf 1884) Lehmann and Neumann 1896 synonym, Pseudomonas polycolor synonym, probable synonym or variety:'
'Pseudomonas polycolor'Clara 1930 synonym Lineage (abbreviated) Bacteria;
Pseudomonas Comments and References:
http://www.ncbi.nlm.nih.gov/htbin-post/Taxonomy/wgetorg?id=103690
. strain PCC 7120 synonym, Nostoc (Anabaena) sp. PCC 7120 synonym, Anabaena PCC7120 synonym, Anabaena
sp PCC 7120 synonym, Anabaena sp. PCC7120 synonym, Anabaena sp. PCC 7120 synonym, Anabaena
sp. 7120 synonym, Anabaena sp.
strain PCC 7120) synonym, Anabaena sp.
PCC 7120) synonym, Anabaena sp.
ATCC 27893) synonym, Anabaena 7120 synonym, Nostoc PCC7120 synonym Lineage (abbreviated) Bacteria;
http://www.ncbi.nlm.nih.gov/htbin-post/Taxonomy/wgetorg?id=813
taxonomy id lock Taxonomy browser (Chlamydia_trachomatis) Chlamydia_trachomatis Taxonomy ID:
Rickettsia trachomae synonym, Rickettsia trachomatis synonym, Chlamydozoon trachomatis synonym, Chlamydia_trachomatis (Busacca 1935) Rake
. 1999 synonym,'Rickettsia trachomae'(sic) Busacca 1935 synonym,'Rickettsia trachomatis'(Busacca 1935) Foley and Parrot 1937 synonym,'Chlamydozoon
Chlamydia Comments and References:
1999) Everett, K. D.,Bush, R. M.,Andersen, A_a.'Emended description of the order Chlamydiales, proposal
. and Eiden, J. J.'Phylogenetic relationship of Chlamydia_pneumoniae to Chlamydia_psittaci and Chlamydia_trachomatis as determined by analysis of 16s ribosomal DNA sequences.'
. and Hirai, K.'Restriction fragment length polymorphisms of rrna as genetic markers to differentiate Chlamydia spp.'
http://www.ncbi.nlm.nih.gov/htbin-post/Taxonomy/wprintgc?mode=c
and Coelenterate Mitochondrial Code and the Mycoplasma/Spiroplasma Code The Invertebrate Mitochondrial Code The Ciliate, Dasycladacean and Hexamita
and Coelenterate Mitochondrial Code and the Mycoplasma/Spiroplasma Code (transl_table=4) AAS=FFLLSSSSYY**CCWWLLLLPPPPHHQQRRRRIIIMTTTTNNKKSSRRVVVVAAAADDE GGGG Starts
Mycoplasma, Spiroplasma (Bove et_al.
This code is_used not in the Acholeplasmataceae and plant-pathogenic mycoplasma-like organisms (MLO)( Lim and Sears,
UGA codes at low efficiency for Trp in Bacillus_subtilis and, presumably, in Escherichia_coli (Hatfiled and Diamond, 1993.
CUG is_known to function as an initiator for_one plasmid-encoded protein (Repa) in Escherichia_coli (Spiers and Bergquist, 1992) and possibly in Methanobacterium thermoautotrophicum (Noelling et_al.
and Saillard, C. 1989) in The Mycoplasmas, R. F. Whitcomb and J. G. Tully, eds.,
http://www.ncbi.nlm.nih.gov/htbin-post/Taxonomy/wgetorg?id=305
Pseudomonas_solanacearum synonym, Burkholderia solanacearum synonym, Bacillus solanacearum synonym,'Bacillus solanacearum'synonym Lineage
. and Arakawa, M.'Proposal of Burkholderia gen. nov. and transfer of seven species of the Genus_pseudomonas homology group II to the new genus, with the type_species
Burkholderia_cepacia (Palleroni and Holmes 1981) comb. nov.'Microbiol. Immunol.
1996) 46: 625-626. VALIDATION LIST N°45 (Burkholderia solanacearum) VALIDATION LIST N°45. Int. J. Syst. Bacteriol.
. and Fegan, M.'Analysis of the phylogenetic relationships of strains of Burkholderia solanacearum, Pseudomonas syzygii,
http://www.ncbi.nlm.nih.gov/htbin-post/Taxonomy/wgetorg?id=666
taxonomy id lock Taxonomy browser (Vibrio_cholerae) Display levels nucleotides proteins structures genome
Vibrio Vibrio_cholerae Click on name to get more information.
Vibrio_cholerae 569b Vibrio_cholerae non-O1 Vibrio_cholerae non-O1/non-O139 Vibrio_cholerae O1 Vibrio_cholerae O1 biovar
eltor Vibrio_cholerae O139 Vibrio_cholerae O27 Vibrio_cholerae O37 Comments and questions to info@ncbi. nlm. nih.
http://www.ncbi.nlm.nih.gov/htbin-post/Taxonomy/wgetorg?id=2107
taxonomy id lock Taxonomy browser (Mycoplasma pulmonis) Mycoplasma pulmonis Taxonomy ID:
Murimyces pulmonis synonym, Musculomyces histotropicus synonym, Asterococcus pulmonis synonym, Mycoplasma histotropicus synonym
, Mycoplasma mergenhagen synonym, Mycoplasma pulmonis (Sabin 1941) Freundt 1955 synonym,'Murimyces pulmonis'Sabin 1941 synonym
,'Musculomyces histotropicus'Sabin 1941 synonym,'Asterococcus pulmonis (Sabin 1941) Prevot 1961 synonym,'Mycoplasma histotropicus'(sic)( Sabin
1941) Tully 1965 synonym,'Mycoplasma mergenhagen'Grace et_al.
Mycoplasma Comments and References:
. and James, C.'Mycoplasmas (PPLO) and human leukemia and lymphoma.'
http://www.ncbi.nlm.nih.gov/htbin-post/Taxonomy/wgetorg?id=180835
taxonomy id lock Taxonomy browser (Agrobacterium_tumefaciens str.
C58 (U. Washington)) Agrobacterium_tumefaciens str.
Rhizobium radiobacter str.
C58 (U. Washington) synonym, Agrobacterium_tumefaciens str.
C58 (Dupont) equivalent name, Rhizobium radiobacter str.
Rhizobiaceae group;
Agrobacterium_tumefaciens str.
and Nester, E_w.'The genome of the natural genetic engineer Agrobacterium_tumefaciens C58.'
http://www.ncbi.nlm.nih.gov/cgi-bin/Entrez/framik?db=G&gi=115
Summary sequence view BLAST Pubmed Nucleotide Protein Genome Structure Popset Taxonomy Help Escherichia_coli K12, complete genome
Escherichia_coli K12 Genetic Code:
Escherichia. The complete genome sequence of Escherichia_coli K-12 Blattner, F. R.,Plunkett, G. III, Bloch, C_a.,Perna
http://www.ncbi.nlm.nih.gov/htbin-post/Taxonomy/wgetorg?id=90370
taxonomy id lock Taxonomy browser (Salmonella_enterica subsp.
enterica serovar Typhi) Salmonella_enterica subsp. enterica serovar Typhi Taxonomy ID:
Salmonella_enterica serotype Typhi synonym, Salmonella_enterica ser.
typhi synonym, Salmonella choleraesuis serovar Typhi synonym, Salmonella choleraesuis typhi synonym, Salmonella_enterica
Salmonella_enterica Nucleotide (30) Protein (9539) Genome records (3) Comments and questions to info@ncbi. nlm. nih.
http://www.ncbi.nlm.nih.gov/htbin-post/Taxonomy/wgetorg?id=29459
taxonomy id lock Taxonomy browser (Brucella_melitensis) Display levels nucleotides proteins structures genome
Rhizobiaceae group;
Brucella Brucella_melitensis Click on name to get more information.
Brucella_melitensis biovar Abortus Brucella_abortus 1 Brucella_melitensis biovar Canis Brucella_melitensis biovar Neotomae Brucella_melitensis biovar
Ovis Brucella_melitensis biovar Suis Comments and questions to info@ncbi. nlm. nih.
http://www.ncbi.nlm.nih.gov/htbin-post/Taxonomy/wgetorg?id=381
Rhizobium loti synonym, Mesorhizobium loti (Jarvis et_al.
1982) Jarvis et_al. 1997 synonym, Rhizobium loti Jarvis et_al. 1982 synonym Lineage (abbreviated) Bacteria;
Rhizobiaceae group;
. and Gillis, M.'Transfer of Rhizobium loti, Rhizobium huakuii, Rhizobium ciceri, Rhizobium mediterraneum,
and Rhizobium tianshanense to Mesorhizobium gen. nov.'Int. J. Syst. Bacteriol.
. and Patel, J. J.'Rhizobium loti, a new species of legume root nodule bacteria.'
http://www.ncbi.nlm.nih.gov/cgi-bin/Entrez/framik?db=Genome&gi=26
Summary sequence view BLAST Pubmed Nucleotide Protein Genome Structure Popset Taxonomy Help Mycoplasma genitalium, complete genome
Mycoplasma genitalium Genetic Code:
Mycoplasma. A survey of the Mycoplasma genitalium genome by using random sequencing Peterson, S_n.,Hu, P. C.,Bott, K
. F. and Hutchison, C_a. III. J. Bacteriol. 175 (24), 7918-7930 (1993) 94075230 The minimal gene complement of Mycoplasma genitalium Fraser, C. M
270 (5235), 397-403 (1995) 96026346 Characterization of repetitive DNA in the Mycoplasma genitalium genome:
http://www.ncbi.nlm.nih.gov/htbin-post/Taxonomy/wgetorg?id=85962
taxonomy id lock Taxonomy browser (Helicobacter_pylori 26695) Helicobacter_pylori 26695 Taxonomy ID:
Helicobacter_pylori KE26695 synonym, Helicobacter_pylori ATCC700392 synonym, Helicobacter_pylori (strain 26695) synonym Lineage (abbreviated) Bacteria;
Helicobacter group;
Helicobacter_pylori Comments and References:
1997) Helicobacter_pylori complete genome. Nucleotide (139) Protein (3142) Genome records (1) Comments and questions to info@ncbi. nlm. nih. gov Credits:
http://www.ncbi.nlm.nih.gov/cgi-bin/Entrez/framik?db=G&gi=26
Summary sequence view BLAST Pubmed Nucleotide Protein Genome Structure Popset Taxonomy Help Mycoplasma genitalium, complete genome
Mycoplasma genitalium Genetic Code:
Mycoplasma. A survey of the Mycoplasma genitalium genome by using random sequencing Peterson, S_n.,Hu, P. C.,Bott, K
. F. and Hutchison, C_a. III. J. Bacteriol. 175 (24), 7918-7930 (1993) 94075230 The minimal gene complement of Mycoplasma genitalium Fraser, C. M
270 (5235), 397-403 (1995) 96026346 Characterization of repetitive DNA in the Mycoplasma genitalium genome:
http://www.ncbi.nlm.nih.gov/cgi-bin/Entrez/framik?db=G&gi=113
Summary sequence view BLAST Pubmed Nucleotide Protein Genome Structure Popset Taxonomy Help Mycoplasma_pneumoniae, complete genome Microbial genomes Refseq:
Mycoplasma_pneumoniae Genetic Code:
Mycoplasma. Complete sequence analysis of the genome of the bacterium Mycoplasma_pneumoniae Himmelreich, R.,Hilbert, H.,Plagens, H.,Pirkl
4420-4449 (1996) 97105885 Re-annotating the mycoplasma_pneumoniae genome sequence:
http://www.ncbi.nlm.nih.gov/cgi-bin/Entrez/framik?db=Genome&gi=176
Summary sequence view BLAST Pubmed Nucleotide Protein Genome Structure Popset Taxonomy Help Escherichia_coli_o157:
Escherichia. Complete nucleotide sequence of the prophage VT2-Sakai carrying the verotoxin 2 genes of the enterohemorrhagic Escherichia_coli_o157:
. Syst. 74 (5), 227-239 (1999) 20198780 Comparative analysis of the whole set of rrna operons between an enterohemorrhagic Escherichia_coli_o157:
H7 Sakai strain and an Escherichia_coli K-12 strain MG1655 Ohnishi, M.,Murata, T.,Nakayama
. Appl. Microbiol. 23 (3), 315-324 (2000) 20557356 Complete nucleotide sequence of the prophage VT1-Sakai carrying the Shiga toxin 1 genes of the enterohemorrhagic Escherichia_coli_o157:
. and Shinagawa, H. Gene 258 (1-2), 127-139 (2000) 20564182 Complete genome sequence of enterohemorrhagic Escherichia_coli_o157:
http://www.ncbi.nlm.nih.gov/cgi-bin/Entrez/framik?db=Genome&gi=113
Summary sequence view BLAST Pubmed Nucleotide Protein Genome Structure Popset Taxonomy Help Mycoplasma_pneumoniae, complete genome Microbial genomes Refseq:
Mycoplasma_pneumoniae Genetic Code:
Mycoplasma. Complete sequence analysis of the genome of the bacterium Mycoplasma_pneumoniae Himmelreich, R.,Hilbert, H.,Plagens, H.,Pirkl
4420-4449 (1996) 97105885 Re-annotating the mycoplasma_pneumoniae genome sequence:
http://www.ncbi.nlm.nih.gov/cgi-bin/Entrez/framik?db=G&gi=176
Summary sequence view BLAST Pubmed Nucleotide Protein Genome Structure Popset Taxonomy Help Escherichia_coli_o157:
Escherichia. Complete nucleotide sequence of the prophage VT2-Sakai carrying the verotoxin 2 genes of the enterohemorrhagic Escherichia_coli_o157:
. Syst. 74 (5), 227-239 (1999) 20198780 Comparative analysis of the whole set of rrna operons between an enterohemorrhagic Escherichia_coli_o157:
H7 Sakai strain and an Escherichia_coli K-12 strain MG1655 Ohnishi, M.,Murata, T.,Nakayama
. Appl. Microbiol. 23 (3), 315-324 (2000) 20557356 Complete nucleotide sequence of the prophage VT1-Sakai carrying the Shiga toxin 1 genes of the enterohemorrhagic Escherichia_coli_o157:
. and Shinagawa, H. Gene 258 (1-2), 127-139 (2000) 20564182 Complete genome sequence of enterohemorrhagic Escherichia_coli_o157:
http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=Genome
Xanthomonas axonopodis pv.
Comparison of the genomes of two Xanthomonas pathogens with differing host specificities.
5, 076,187 bp Xanthomonas axonopodis pv. citri strain 306, a Gram-negative aerobic rod, is an important plant pathogen
and leaves and general tree decline. The genome sequencing of Xanthomonas axonopodis pv. citri has_been_completed
and necrosis2. Xanthomonas_campestris pv. campestris is_used commercially to produce the exopolysaccharide xanthan gum,
and stabilizing agent in many industries. The genome sequencing of Xanthomonas_campestris pv. campestris strain ATCC33913 has_been_completed
http://www.ncbi.nlm.nih.gov/htbin-post/Taxonomy/wgetorg?id=181661
taxonomy id lock Taxonomy browser (Agrobacterium_tumefaciens str.
C58 (Cereon)) Agrobacterium_tumefaciens str.
Rhizobium radiobacter str.
Rhizobiaceae group;
Agrobacterium_tumefaciens str.
and Slater, S.'Genome sequence of the plant pathogen and biotechnology agent Agrobacterium_tumefaciens C58.'
http://www.ncbi.nlm.nih.gov/htbin-post/Taxonomy/wgetorg?id=781
taxonomy id lock Taxonomy browser (Rickettsia_conorii) Rickettsia_conorii Taxonomy ID:
Rickettsia_conorii Brumpt 1932 synonym Lineage (abbreviated) Bacteria;
(Rickettsia conori, n. sp.
http://www.ncbi.nlm.nih.gov/htbin-post/Taxonomy/wgetorg?id=747
taxonomy id lock Taxonomy browser (Pasteurella_multocida) Display levels nucleotides proteins structures genome
Pasteurella Pasteurella_multocida Click on name to get more information.
Pasteurella_multocida subsp.
gallicida Pasteurella_multocida subsp. multocida Pasteurella_multocida subsp. septica Pasteurella_multocida subsp. tigris Comments and questions
http://www.ncbi.nlm.nih.gov/cgi-bin/Entrez/framik?db=Genome&gi=199
Summary sequence view BLAST Pubmed Nucleotide Protein Genome Structure Popset Taxonomy Help Rickettsia_conorii Malish 7, complete genome
Rickettsia_conorii Genetic Code:
spotted_fever group. Selfish DNA in protein-coding genes of Rickettsia Ogata, H.,Audic, S.,Barbe, V
in Rickettsia_conorii and R. prowazekii Ogata, H.,Audic, S.,Renesto-Audiffren, P.,Fournier, P
http://www.ncbi.nlm.nih.gov/cgi-bin/Entrez/taxik?gi=128
Helicobacter_pylori 26695 Taxtable BLAST Pubmed Nucleotide Protein Genome Structure Taxonomy-Helicobacter (1296)- Helicobacter group (1296)- epsilon
subdivision (1226)- delta/epsilon subdivisions (1226)- Proteobacteria (1188)- Bacteria (1041)- cellular organisms (321) 1576 Helicobacter_pylori 26695 proteins:
http://www.ncbi.nlm.nih.gov/cgi-bin/Entrez/taxik?gi=139
Helicobacter_pylori J99 Taxtable BLAST Pubmed Nucleotide Protein Genome Structure Taxonomy-Helicobacter (1283)- Helicobacter
group (1283)- epsilon subdivision (1220)- delta/epsilon subdivisions (1220)- Proteobacteria (1187)- Bacteria (1033)- cellular organisms (312) 1491 Helicobacter_pylori J99 proteins:
http://www.ncbi.nlm.nih.gov/cgi-bin/Entrez/taxik?gi=169
H7 EDL933 Taxtable BLAST Pubmed Nucleotide Protein Genome Structure Taxonomy-Enterobacteriaceae (4516)- Enterobacteriaceae
group (4512)- gamma subdivision (4348)- Proteobacteria (4140)- Bacteria (3634)- cellular organisms (1640) 5324 Escherichia_coli_o157:
http://www.ncbi.nlm.nih.gov/cgi-bin/Entrez/taxik?gi=221
Agrobacterium_tumefaciens str.
C58 (U. Washington) Taxtable BLAST Pubmed Nucleotide Protein Genome Structure Taxonomy-Rhizobiaceae
(1665)- Rhizobiaceae group (1633)- alpha subdivision (1622)- Proteobacteria (1548)- Bacteria (1392)- cellular organisms (522) 1876 Agrobacterium_tumefaciens str.
http://www.ncbi.nlm.nih.gov/cgi-bin/Entrez/framik?db=G&gi=199
Summary sequence view BLAST Pubmed Nucleotide Protein Genome Structure Popset Taxonomy Help Rickettsia_conorii Malish 7, complete genome
Rickettsia_conorii Genetic Code:
spotted_fever group. Selfish DNA in protein-coding genes of Rickettsia Ogata, H.,Audic, S.,Barbe, V
in Rickettsia_conorii and R. prowazekii Ogata, H.,Audic, S.,Renesto-Audiffren, P.,Fournier, P
http://www.ncbi.nlm.nih.gov/cgi-bin/Entrez/taxik?gi=189
Agrobacterium_tumefaciens str.
C58 (Cereon) Taxtable BLAST Pubmed Nucleotide Protein Genome Structure Taxonomy-Rhizobiaceae (2474)- Rhizobiaceae
group (2363)- alpha subdivision (2304)- Proteobacteria (2199)- Bacteria (1933)- cellular organisms (619) 2721 Agrobacterium_tumefaciens str.
http://www.ncbi.nlm.nih.gov/cgi-bin/Entrez/taxik?gi=220
Agrobacterium_tumefaciens str.
C58 (U. Washington) Taxtable BLAST Pubmed Nucleotide Protein Genome Structure Taxonomy-Rhizobiaceae
(2453)- Rhizobiaceae group (2358)- alpha subdivision (2305)- Proteobacteria (2206)- Bacteria (1942)- cellular organisms (615) 2785 Agrobacterium_tumefaciens str.
http://www.ncbi.nlm.nih.gov/cgi-bin/Entrez/taxik?gi=190
Agrobacterium_tumefaciens str.
C58 (Cereon) Taxtable BLAST Pubmed Nucleotide Protein Genome Structure Taxonomy-Rhizobiaceae (1671)- Rhizobiaceae
group (1635)- alpha subdivision (1622)- Proteobacteria (1543)- Bacteria (1388)- cellular organisms (519) 1833 Agrobacterium_tumefaciens str.
http://www.ncbi.nlm.nih.gov/cgi-bin/Entrez/taxik?gi=160
Chlamydophila_pneumoniae J138 Taxtable BLAST Pubmed Nucleotide Protein Genome Structure Taxonomy-Chlamydiaceae (767)- Chlamydiales
(767)- Chlamydiales/Verrucomicrobia group (767)- Bacteria (666)- cellular organisms (204) 1069 Chlamydophila_pneumoniae J138 proteins:
http://www.ncbi.nlm.nih.gov/cgi-bin/Entrez/taxik?gi=115
Escherichia_coli K12 Taxtable BLAST Pubmed Nucleotide Protein Genome Structure Taxonomy-Enterobacteriaceae (3828)- Enterobacteriaceae
group (3827)- gamma subdivision (3674)- Proteobacteria (3484)- Bacteria (3061)- cellular organisms (1108) 4279 Escherichia_coli K12 proteins:
http://www.ncbi.nlm.nih.gov/cgi-bin/Entrez/taxik?gi=164
Buchnera sp.
APS Taxtable BLAST Pubmed Nucleotide Protein Genome Structure Taxonomy-Buchnera (564)- ant, tsetse,
and aphid endosymbionts (564)- Enterobacteriaceae group (562)- gamma subdivision (558)- Proteobacteria (546)- Bacteria (508)- cellular organisms (154) 564 Buchnera sp.
http://www.ncbi.nlm.nih.gov/cgi-bin/Entrez/framik?db=G&gi=25
Summary sequence view BLAST Pubmed Nucleotide Protein Genome Structure Popset Taxonomy Help Haemophilus_influenzae Rd, complete genome
Haemophilus_influenzae Rd Genetic Code:
Haemophilus. Whole-genome random sequencing and assembly of Haemophilus_influenzae Rd Fleischmann, R. D.,Adams, M_d.,White, O
. Science 269 (5223), 496-512 (1995) 95350630 Metabolism and evolution of Haemophilus_influenzae deduced from a whole-genome comparison with Escherichia_coli Tatusov, R. L.,Mushegian, A_r
. Biol. 6 (3), 279-291 (1996) 96398784 Two-dimensional map of the proteome of Haemophilus_influenzae Langen, H.,Takacs, B.,Evers, S.
http://www.ncbi.nlm.nih.gov/htbin-post/Taxonomy/wgetorg?id=2104
taxonomy id lock Taxonomy browser (Mycoplasma_pneumoniae) Mycoplasma_pneumoniae Taxonomy ID:
'Filterable agent of primary atypical pneumonia'synonym, Schizoplasma pneumoniae synonym, Mycoplasma_pneumoniae Somerson et_al.
Mycoplasma Comments and References:
. and Chanock, R. M.'Hemolysin production as an aid in the identification of Eaton agent (Mycoplasma_pneumoniae).'
http://www.ncbi.nlm.nih.gov/htbin-post/Taxonomy/wgetorg?id=83560
taxonomy id lock Taxonomy browser (Chlamydia_muridarum) Chlamydia_muridarum Taxonomy ID:
Chlamydia_trachomatis Mopn synonym, Chlamydia_muridarum Everett et_al.
Chlamydia Comments and References:
1999) Everett, K. D.,Bush, R. M.,Andersen, A_a.'Emended description of the order Chlamydiales, proposal
http://www.ncbi.nlm.nih.gov/htbin-post/Taxonomy/wgetorg?id=115713
taxonomy id lock Taxonomy browser (Chlamydophila_pneumoniae CWL029) Chlamydophila_pneumoniae CWL029 Taxonomy ID:
Chlamydophila_pneumoniae Comments and References:
http://www.ncbi.nlm.nih.gov/cgi-bin/Entrez/framik?db=Genome&gi=25
Summary sequence view BLAST Pubmed Nucleotide Protein Genome Structure Popset Taxonomy Help Haemophilus_influenzae Rd, complete genome
Haemophilus_influenzae Rd Genetic Code:
Haemophilus. Whole-genome random sequencing and assembly of Haemophilus_influenzae Rd Fleischmann, R. D.,Adams, M_d.,White, O
. Science 269 (5223), 496-512 (1995) 95350630 Metabolism and evolution of Haemophilus_influenzae deduced from a whole-genome comparison with Escherichia_coli Tatusov, R. L.,Mushegian, A_r
. Biol. 6 (3), 279-291 (1996) 96398784 Two-dimensional map of the proteome of Haemophilus_influenzae Langen, H.,Takacs, B.,Evers, S.
http://www.ncbi.nlm.nih.gov/htbin-post/Taxonomy/wgetorg?id=2097
taxonomy id lock Taxonomy browser (Mycoplasma genitalium) Mycoplasma genitalium Taxonomy ID:
Mycoplasma genitalium Tully et_al.
Mycoplasma Comments and References:
. and Bove, J. M.'Mycoplasma genitalium, a new species from the human urogenital tract.'
http://www.ncbi.nlm.nih.gov/htbin-post/Taxonomy/wgetorg?id=115711
taxonomy id lock Taxonomy browser (Chlamydophila_pneumoniae AR39) Chlamydophila_pneumoniae AR39 Taxonomy ID:
Chlamydophila_pneumoniae Comments and References:
. and Fraser, C. M.'Genome sequences of Chlamydia_trachomatis Mopn and Chlamydia_pneumoniae AR39.'
http://www.ncbi.nlm.nih.gov/htbin-post/Taxonomy/wgetorg?id=1769
, Mycoplasma leprae misnomer Lineage (abbreviated) Bacteria;
http://www.ncbi.nlm.nih.gov/cgi-bin/Entrez/framik?db=Genome&gi=188
Chromosome plasmid psyma plasmid psymb Sinorhizobium_meliloti 1021 complete genomes Microbial genomes Refseq:
Sinorhizobium_meliloti Genetic Code:
Rhizobiaceae group;
Sinorhizobium. The composite genome of the legume symbiont Sinorhizobium_meliloti Galibert, F.,Finan, T. M.,Long, S. R
668-672 (2001) 21368234 Analysis of the chromosome sequence of the legume symbiont Sinorhizobium_meliloti strain 1021 Capela, D.,Barloy-Hubler, F.,Gouzy
http://www.ncbi.nlm.nih.gov/cgi-bin/Entrez/framik?db=G&gi=183
Summary sequence view BLAST Pubmed Nucleotide Protein Genome Structure Popset Taxonomy Help Mycoplasma pulmonis complete genome
Mycoplasma pulmonis Genetic Code:
Mycoplasma. The complete genome sequence of the murine respiratory pathogen Mycoplasma pulmonis Chambaud, I.,Heilig, R.,Ferris, S.,Barbe
http://www.ncbi.nlm.nih.gov/cgi-bin/Entrez/taxik?gi=25
Haemophilus_influenzae Rd Taxtable BLAST Pubmed Nucleotide Protein Genome Structure Taxonomy-Pasteurellaceae (1641)- Pasteruellaceae
group (1641)- gamma subdivision (1571)- Proteobacteria (1490)- Bacteria (1305)- cellular organisms (413) 1714 Haemophilus_influenzae Rd proteins:
http://www.ncbi.nlm.nih.gov/cgi-bin/Entrez/framik?db=G&gi=151
Summary sequence view BLAST Pubmed Nucleotide Protein Genome Structure Popset Taxonomy Help Ureaplasma_urealyticum, complete genome Microbial genomes Refseq:
Ureaplasma_urealyticum Genetic Code:
Ureaplasma. The complete sequence of the mucosal pathogen Ureaplasma_urealyticum Glass, J. I.,Lefkowitz, E. J.,Glass